tdbPDB000024

Name	Value
Coding AA:	Trp
Anticodon sequence:	CCA
Organism:	Escherichia coli NCBI:txid562
RNA type:	cytoplasmic
Sequence:	GCGUAGUUCAAUUGGUAGAGCACCGGUCaAAACCGGGuGuUGGGAGUUCGAGUCUCUCCGCC
Unmodified sequence:	GCGUAGUUCAAUUGGUAGAGCACCGGUCaAAACCGGGuGuUGGGAGUUCGAGUCUCUCCGCC
Secondary structure:	(((..((((.....[..)))).(((((....))))).....(((((..]....)))))))).
PDB ID:	4ycp
Homology model or structure extracted from PDB:	Extracted Download (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: June 26, 2025
Folding free energy [kcal/mol]:	-16.80
Pre-aligned sequence: Pre-aligned secondary structure:	-----GCGUAGUUCAAUU-GGU--AGAGCACCGGUCa---AAACCGGGu-------------------GuUGGGAGUUCGAGUCUCUCCGCC------- .....(((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))........
Publications:	Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases. Robert T Byrne, Huw T Jenkins, Daniel T Peters, Fiona Whelan, James Stowell, Naveed Aziz, Pavel Kasatsky, Marina V Rodnina, Eugene V Koonin, Andrey L Konevega, Alfred A Antson Proceedings of the National Academy of Sciences of the United States of America volume: 112 issue: 19 date: May 12, 2015 epub: April 22, 2015 PUBMED ID: 25902496 DOI: 10.1073/pnas.1500161112

Model based on:

Moderna