tdbPDB000046

NameValue
Coding AA: Cys
Anticodon sequence: UCA
Organism: Archaeoglobus fulgidus NCBI:txid2234
RNA type: cytoplasmic
Sequence: gCCAGGGUGGCAGAGGGGCUUUGCGGCGGACUUCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGCTCCA
Unmodified sequence: gCCAGGGUGGCAGAGGGGCUUUGCGGCGGACUUCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGCTCCA
Secondary structure: (((((((..(((.....[...))).(((((.......))))).....(((((..]....))))))))))))....
PDB ID: 2du5
Homology model or
structure extracted from PDB:
Extracted Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: May 30, 2019, modified: June 26, 2025
Folding free energy [kcal/mol]: -30.50
Pre-aligned sequence:
Pre-aligned secondary structure:
-gCCAGGGUGGCAGAGG--GGCU--UUGCGGCGGACUUCAGAUCCGCU-UUA------------------CCCCGGUUCGAAUCCGGGCCCUGGCTCCA
.(((((((..(((.......[.....))).(((((.......)))))........................(((((..]....))))))))))))....
Publications:
  • Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
    Ryuya Fukunaga, Shigeyuki Yokoyama
    Nature structural & molecular biology
    volume: 14 issue: 4 epub: March 11, 2007 PUBMED ID: 17351629
Comments: tRNACys with opal anticodon

Secondary structure

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Tertiary structure

Model based on:
Moderna
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