tdbR00001008 (deprecated)

Name	Value
Coding AA:	Ser
Anticodon sequence:	5GA
Organism:	Staphylococcus aureus NCBI:txid1280
RNA type:	cytoplasmic
Sequence:	GGAGGAAUACCCAAGUCCGGCUGA"GGGACU5GA+AACCGACAGGGCCUUAACGGGCCGCGGGGGTUCGAAUCCCUCUUCCUCCGCCA
Unmodified sequence:	GGAGGAAUACCCAAGUCCGGCUGAAGGGACUUGAAAACCGACAGGGCCUUAACGGGCCGCGGGGGUUCGAAUCCCUCUUCCUCCGCCA
Secondary structure:	(((((((..(((.............))).(((((.......)))))...................(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model (last update May 21, 2020)
Prepared by:	User
Version:	unversioned, created: May 21, 2020, modified: Nov. 7, 2024
Folding free energy [kcal/mol]:	100000.00
Pre-aligned sequence: Pre-aligned secondary structure:	-GGAGGAAUACCCAAGUCCGGCUGA”GGGAUCGGUCU5GA+AACCGACAGGGCCU--UAA--CGGGCCG-CGGGGGTUCGAAUCCCUCUUCCUCCGCCA .(((((((..(((.............))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	MODOMICS: a database of RNA modification pathways. 2017 update. Pietro Boccaletto, Magdalena A Machnicka, Elzbieta Purta, Pawel Piatkowski, Blazej Baginski, Tomasz K Wirecki, Valérie de Crécy-Lagard, Robert Ross, Patrick A Limbach, Annika Kotter, Mark Helm, Janusz M Bujnicki Nucleic acids research volume: 46 issue: D1 date: Jan. 4, 2018 PUBMED ID: 29106616 DOI: 10.1093/nar/gkx1030
Next entry:	tdbR00001008 (July 2, 2025, 2:55 p.m.)

Model based on: