tdbR00000587

Name	Value
Coding AA:	Met
Anticodon sequence:	CAU
Organism:	Aeropyrum pernix NCBI:txid56636
RNA type:	cytoplasmic
Sequence:	GCCGCCGUAGCUCAGCCUGGCAGAGCGCCGGACUCAUAAUCCGGAGGUCCCGGGUUCGAAUCCCGGCGGCGGCACCA
Unmodified sequence:	GCCGCCGUAGCUCAGCCUGGCAGAGCGCCGGACUCAUAAUCCGGAGGUCCCGGGUUCGAAUCCCGGCGGCGGCACCA
Secondary structure:	(((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-35.10
Pre-aligned sequence: Pre-aligned secondary structure:	-GCCGCCGUAGCUCAGCCUGGC--AGAGCGCCGGACUCAUAAUCCGGAG-------------------GUCCCGGGUUCGAAUCCCGGCGGCGGCACCA .(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	Characterization of a whole set of tRNA molecules in an aerobic hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1. Syuji Yamazaki, Hisashi Kikuchi, Yutaka Kawarabayasi DNA research : an international journal for rapid publication of reports on genes and genomes volume: 12 issue: 6 epub: Feb. 23, 2006 PUBMED ID: 16769697
Comments:	MODIFIED NUCLEOTIDES WERE NOT DETERMINED

Model based on:

Moderna

RNA Composer