tdbR00000394

Name	Value
Coding AA:	Ser
Anticodon sequence:	VGA
Organism:	Escherichia coli NCBI:txid562
RNA type:	cytoplasmic
Sequence:	GGAAGUG4GGCCGAGC#GDDGAAGGCACCGGUBUVGA*AACCGGCGACCCGAAAGGGUUCCAGAGTPCGAAUCUCUGCGCUUCCGCCA
Unmodified sequence:	GGAAGUGUGGCCGAGCGGUUGAAGGCACCGGUCUUGAAAACCGGCGACCCGAAAGGGUUCCAGAGUUCGAAUCUCUGCGCUUCCGCCA
Secondary structure:	(((((((..(((...........))).(((((.......)))))................(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-25.00
Pre-aligned sequence: Pre-aligned secondary structure:	-GGAAGUG4GGCCGAGC--#GDDGAAGGCACCGGUBUVGA*AACCGGC-GACCC--GAAA---GGGUU--CCAGAGTPCGAAUCUCUGCGCUUCCGCCA .(((((((..(((.............))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	The nucleotide sequence of a serine tRNA from Escherichia coli. H Ishikura, Y Yamada, S Nishimura FEBS letters volume: 16 issue: 1 date: July 15, 1971 PUBMED ID: 11945903 Identification of a modified nucleoside in Escherichia coli tRNA1Ser as 2'-O-methylcytidine. Y Yamada, H Ishikura Biochimica et biophysica acta volume: 402 issue: 3 date: Sept. 1, 1975 PUBMED ID: 1100116

Model based on:

Moderna

RNA Composer