tdbR00000578

NameValue
Coding AA: Glu
Anticodon sequence: 3UC
Organism: Leishmania tarentolae NCBI:txid5689
RNA type: cytoplasmic
Sequence: UCCGAUGUAGUAUAACGGUUAGAACACCUGGBU3UCACCCAGGAGAUCCGGGUUCGAUUCCCGGUAUCGGAG
Unmodified sequence: UCCGAUGUAGUAUAACGGUUAGAACACCUGGCUUUCACCCAGGAGAUCCGGGUUCGAUUCCCGGUAUCGGAG
Secondary structure: (((((((..((.(........).)).(((((.......)))))....(((((.......)))))))))))).
Homology model or
structure extracted from PDB:		 Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]: -19.30
Pre-aligned sequence:
Pre-aligned secondary structure:		 -UCCGAUGUAGUAUAAC--GGUU-AGAACACCUGGBU3UCACCCAGGAG-------------------A-UCCGGGUUCGAUUCCCGGUAUCGGAG---
.(((((((..((.(...........).)).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Differential localization of nuclear-encoded tRNAs between the cytosol and mitochondrion in Leishmania tarentolae.
    Stephen T Kapushoc, Juan D Alfonzo, Larry Simpson
    RNA (New York, N.Y.)
    volume: 8 issue: 1 PUBMED ID: 11871660
  • Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism.
    Tomonori Kaneko, Takeo Suzuki, Stephen T Kapushoc, Mary Anne Rubio, Jafar Ghazvini, Kimitsuna Watanabe, Larry Simpson, Tsutomu Suzuki
    The EMBO journal
    volume: 22 issue: 3 date: Feb. 3, 2003 PUBMED ID: 12554666
Comments: IN POSITION 34 IN MI TRNA IS MCM5UM;PRESENT IN BOTH- CYTOSOL AND MITOCHONDRIA;IMPORTED FROM CYTO;DNA SEQUENCE WAS DETERMINED BY REVERSE TRANSCRIPTION OF TRNA

Secondary structure

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Tertiary structure

Model based on:
Moderna
RNA Composer
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