tdbR00000299

Name	Value
Coding AA:	Asn
Anticodon sequence:	GPU
Organism:	Asterias amurensis NCBI:txid7602
RNA type:	mitochondrial
Sequence:	UGGGUUGU"GCCUAAUGGAAAGGCAAPUGGCCGPU6ACCAGGAGAUAACAAGAUCA"UACUUGUCAACUCAGCCA
Unmodified sequence:	UGGGUUGUAGCCUAAUGGAAAGGCAAUUGGCCGUUAACCAGGAGAUAACAAGAUCAAUACUUGUCAACUCAGCCA
Secondary structure:	(((((((..((((.......))))..((((.......))))......(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-14.80
Pre-aligned sequence: Pre-aligned secondary structure:	-UGGGUUGU"GCCUAAU--GGA--AAGGCAAPUGGCCGPU6ACCAGGAG-------------------AUAACAAGAUCA"UACUUGUCAACUCAGCCA .(((((((..((((...........))))..((((.......)))).........................(((((.......))))))))))))....
Publications:	The presence of pseudouridine in the anticodon alters the genetic code: a possible mechanism for assignment of the AAA lysine codon as asparagine in echinoderm mitochondria. K Tomita, T Ueda, K Watanabe Nucleic acids research volume: 27 issue: 7 date: April 1, 1999 PUBMED ID: 10076000

Model based on:

Moderna

RNA Composer