tdbR00000029

Name	Value
Coding AA:	Asp
Anticodon sequence:	QUC
Organism:	Asterias amurensis NCBI:txid7602
RNA type:	mitochondrial
Sequence:	AAGAAACU"GUUAAACUAAUAACACUGGAUUQUCAGACCGGAGUAACUGGUAAACAAUCAGUGUUUCUUGCCA
Unmodified sequence:	AAGAAACUAGUUAAACUAAUAACACUGGAUUGUCAGACCGGAGUAACUGGUAAACAAUCAGUGUUUCUUGCCA
Secondary structure:	(((((((..((((......)))).((((.........))))....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-11.10
Pre-aligned sequence: Pre-aligned secondary structure:	-AAGAAACU"GUUAAACUA-----AUAACACUGGAUUQUCAGACCGGAG--------------------UAACUGGUAAACAAUCAGUGUUUCUUGCCA .(((((((..((((...........)))).((((.........))))........................(((((.......))))))))))))....
Publications:	The presence of pseudouridine in the anticodon alters the genetic code: a possible mechanism for assignment of the AAA lysine codon as asparagine in echinoderm mitochondria. K Tomita, T Ueda, K Watanabe Nucleic acids research volume: 27 issue: 7 date: April 1, 1999 PUBMED ID: 10076000

Model based on:

Moderna

RNA Composer