tdbR00000570 (deprecated)

Name	Value
Coding AA:	Sec
Anticodon sequence:	NCA
Organism:	Mus musculus NCBI:txid10090
RNA type:	cytoplasmic
Sequence:	GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUNCA+ACCUGUAGCUGUUUAGCGACAGAGUGGUPCA"UUCCACCUUUCGGGCGCCA
Unmodified sequence:	GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUUUAGCGACAGAGUGGUUCAAUUCCACCUUUCGGGCGCCA
Secondary structure:	(((((((..((((........))))((((((.......))))))...............(((((.......))))))))))))....
PDB ID:	3rg5
Homology model or structure extracted from PDB:	Model Download (by Moderna) (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Nov. 7, 2024
Folding free energy [kcal/mol]:	100000.00
Pre-aligned sequence: Pre-aligned secondary structure:	-GCCCGGAU_CCUCAGU--GGUC-UGGGGUGCAGGCUNCA+ACCUGUAGCUGUU--UAGC---GACAG---AGUGGUPCA"UUCCA_UUUCGGGCGCCA .(((((((..((((...........))))((((((.......)))))).......................(((((.......))))))))))))....
Publications:	Minor serine tRNA containing anticodon NCA (C4 RNA) from human and mouse cells. N Kato, H Hoshino, F Harada Biochemistry international volume: 7 issue: 5 PUBMED ID: 6435631 Crystal structure analysis reveals functional flexibility in the selenocysteine-specific tRNA from mouse. Oleg M Ganichkin, Ekaterina A Anedchenko, Markus C Wahl PloS one volume: 6 issue: 5 epub: May 24, 2011 PUBMED ID: 21629646 DOI: e20032
Comments:	34 N IS PROBABLY A MODIFIED U
Next entry:	tdbR00000570 (June 26, 2025, 11:27 a.m.)

Model based on:

Moderna