tdbR00000553

NameValue
Coding AA: Tyr
Anticodon sequence: GUA
Organism: Asterias amurensis NCBI:txid7602
RNA type: mitochondrial
Sequence: GGCAGGGUKGCAGAA"GUDAAUGCACPAAAPUGUAA*UPUAUAAAUAAAGGUPUAAUUCCUUUUCUUGCCACCA
Unmodified sequence: GGCAGGGUGGCAGAAAGUUAAUGCACUAAAUUGUAAAUUUAUAAAUAAAGGUUUAAUUCCUUUUCUUGCCACCA
Secondary structure: (((((((..(((.........)))..((((.......)))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -11.10
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GGCAGGGUKGCAGAA"--GUD--AAUGCACPAAAPUGUAA*UPUAUAA--------------------AUAAAGGUPUAAUUCCUUUUCUUGCCACCA
.(((((((..(((.............)))..((((.......)))).........................(((((.......))))))))))))....
Publications:
  • The presence of pseudouridine in the anticodon alters the genetic code: a possible mechanism for assignment of the AAA lysine codon as asparagine in echinoderm mitochondria.
    K Tomita, T Ueda, K Watanabe
    Nucleic acids research
    volume: 27 issue: 7 date: April 1, 1999 PUBMED ID: 10076000
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