tdbR00000479

NameValue
Coding AA: Trp
Anticodon sequence: BCA
Organism: Mycoplasma capricolum NCBI:txid2095
RNA type: cytoplasmic
Sequence: AGGAGAGUAGUUCAAUGGDAGAACGUCGGUCUBCA=AACCGAGC7UUGAGGGUPCGAUUCCUUUCUCUCCUGCCA
Unmodified sequence: AGGAGAGUAGUUCAAUGGUAGAACGUCGGUCUCCAAAACCGAGCGUUGAGGGUUCGAUUCCUUUCUCUCCUGCCA
Secondary structure: (((((((..((((.......)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:
Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]: -19.70
Pre-aligned sequence:
Pre-aligned secondary structure:
-AGGAGAGUAGUUCAAU--GGD--AGAACGUCGGUCUBCA=AACCGAGC-------------------7UUGAGGGUPCGAUUCCUUUCUCUCCUGCCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. Resemblance to mitochondria.
    Y Andachi, F Yamao, A Muto, S Osawa
    Journal of molecular biology
    volume: 209 issue: 1 date: Sept. 5, 1989 PUBMED ID: 2478713
Comments: 34 PARTIALLY MODIFIED

Secondary structure

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Tertiary structure

Model based on:
Moderna
RNA Composer
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