tdbR00000516

NameValue
Coding AA: Ini
Anticodon sequence: CAU
Organism: Spinacia oleracea NCBI:txid3562
RNA type: plastid
Sequence: CGCGGGGUAGAGCAGUUU#GDAGCUCGCAAGGCUCAUAACCUUGAG7UCACGGGTPCAAAUCCUGUCUCCGCAACCA
Unmodified sequence: CGCGGGGUAGAGCAGUUUGGUAGCUCGCAAGGCUCAUAACCUUGAGGUCACGGGUUCAAAUCCUGUCUCCGCAACCA
Secondary structure: .((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))).....
Homology model or
structure extracted from PDB:
Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]: -23.10
Pre-aligned sequence:
Pre-aligned secondary structure:
-CGCGGGGUAGAGCAGUUU#GD--AGCUCGCAAGGCUCAUAACCUUGAG-------------------7UCACGGGTPCAAAUCCUGUCUCCGCAACCA
..((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))).....
Publications:
  • Homology between chloroplast and prokaryotic initiator tRNA. Nucleotide sequence of spinach chloroplast methionine initiator tRNA.
    J L Calagan, R M Pirtle, I L Pirtle, M A Kashdan, H J Vreman, B S Dudock
    The Journal of biological chemistry
    volume: 255 issue: 20 date: Oct. 25, 1980 PUBMED ID: 7430110

Secondary structure

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Tertiary structure

Model based on:
Moderna
RNA Composer
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