tdbR00000886

Name	Value
Coding AA:	Ile
Anticodon sequence:	¿AU
Organism:	Haloarcula marismortui NCBI:txid2238
RNA type:	cytoplasmic
Sequence:	GGGCCCUUAGCUUA(UCUGGUUAAGCRAUCGGCU¿AU6ACCGAUUGAG?GCUGG]PBOAAUCCGGCAGGGCCCACCA
Unmodified sequence:	GGGCCCUUAGCUUAGUCUGGUUAAGCGAUCGGCUCAUAACCGAUUGAGCGCUGGUUCAAAUCCGGCAGGGCCCACCA
Secondary structure:	(((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-28.30
Pre-aligned sequence: Pre-aligned secondary structure:	-GGGCCCUUAGCUUA(UC-UGG-UUAAGCRAUCGGCU¿AU6ACCGAUUG-------------------AG?GCUGG]PBOAAUCCGGCAGGGCCCACCA .(((((((..((((...........)))).(.(((.......))).)........................(((((.......))))))))))))....
Publications:	Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea. Yoshiho Ikeuchi, Satoshi Kimura, Tomoyuki Numata, Daigo Nakamura, Takashi Yokogawa, Toshihiko Ogata, Takeshi Wada, Takeo Suzuki, Tsutomu Suzuki Nature chemical biology volume: 6 issue: 4 epub: Feb. 7, 2010 PUBMED ID: 20139989 DOI: 10.1038/nchembio.323

Model based on:

Moderna

RNA Composer