tdbPDB000009

NameValue
Coding AA: Lys
Anticodon sequence: UUU
Organism: Bos taurus NCBI:txid9913
RNA type: cytoplasmic
Sequence: gCCCGgAUAgCUCAGUCGguAGAGCAUCAGACUuUUaAUCUGAGGgUccAGGGuUCAaGUCCCUGUUCGGGCGCCA
Unmodified sequence: gCCCGgAUAgCUCAGUCGguAGAGCAUCAGACUuUUaAUCUGAGGgUccAGGGuUCAaGUCCCUGUUCGGGCGCCA
Secondary structure: (((((((..((((.....[..))))..(((.........)))......(((((..]....))))))))))))....
PDB ID: 1fir
Homology model or
structure extracted from PDB:
Extracted Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: May 30, 2019, modified: June 26, 2025
Folding free energy [kcal/mol]: -24.90
Pre-aligned sequence:
Pre-aligned secondary structure:
-gCCCGgAUAgCUCAGU--CGgu-AGAGCAUCAGACUuUUaAUCUGAGG-------------------gUccAGGGuUCAaGUCCCUGUUCGGGCGCCA
.(((((((..((((.......[...))))..(((.........))).........................(((((..]....))))))))))))....
Publications:
  • The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop.
    P Bénas, G Bec, G Keith, R Marquet, C Ehresmann, B Ehresmann, P Dumas
    RNA (New York, N.Y.)
    volume: 6 issue: 10 PUBMED ID: 11073212

Secondary structure

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Tertiary structure

Model based on:
Moderna
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