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tdbPDB000028

NameValue
Coding AA: Tyr
Anticodon sequence: GUA
Organism: Thermus thermophilus NCBI:txid274
RNA type: cytoplasmic
Sequence: gGGCAGGUUCCCGAGcGGCCAAAGGGGACGGUCUGUAAAACCGUUGGCGUAuGCCUUCGCUGGuUCGaAUCCAGCCCUGCCCAcCA
Unmodified sequence: gGGCAGGUUCCCGAGcGGCCAAAGGGGACGGUCUGUAAAACCGUUGGCGUAuGCCUUCGCUGGuUCGaAUCCAGCCCUGCCCAcCA
Secondary structure: (((((((..(((...........)))((((((.......))))))(((....)))...(((((.......))))))))))))....
PDB ID: 1h3e
Homology model or
structure extracted from PDB:		 Extracted Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: May 30, 2019, modified: Aug. 11, 2026
Folding free energy [kcal/mol]: -36.50
Pre-aligned sequence:
Pre-aligned secondary structure:		 -gGGCAGGUUCCCGAGc--GGCCAAAGGGGACGGUCUGUAAAACCGUUGGCGU----------AuGCCUUCGCUGGuUCGaAUCCAGCCCUGCCCAcCA
.(((((((..(((.............)))((((((.......))))))(((..............)))...(((((.......))))))))))))....
Publications:
  • Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition.
    Anna Yaremchuk, Ivan Kriklivyi, Michael Tukalo, Stephen Cusack
    The EMBO journal
    volume: 21 issue: 14 date: July 15, 2002 PUBMED ID: 12110594

Secondary structure

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Tertiary structure

Model based on:
Moderna