tdbPDB000033

NameValue
Coding AA: Cys
Anticodon sequence: GCA
Organism: Methanocaldococcus jannaschii NCBI:txid2190
RNA type: cytoplasmic
Sequence: gCCGGGGUAGUCUAGGGGCUAGGCAGCGGACUGCAGAUCCGCCUUACGUGGGUUCAAAUCCCACCCCCGGCUCCA
Unmodified sequence: gCCGGGGUAGUCUAGGGGCUAGGCAGCGGACUGCAGAUCCGCCUUACGUGGGUUCAAAUCCCACCCCCGGCUCCA
Secondary structure: (((((((...(((....[..)))...(((.........)))......(((((..]....))))))))))))....
PDB ID: 5x6b, 2zzn, 2zzm
Homology model or
structure extracted from PDB:		 Extracted Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: May 30, 2019, modified: June 26, 2025
Folding free energy [kcal/mol]: -23.00
Pre-aligned sequence:
Pre-aligned secondary structure:		 -gCCGGGGUAGUCUAGG--GGCU--AGGCAGCGGACUGCAGAUCCGCC-UUA------------------CGUGGGUUCAAAUCCCACCCCCGGCUCCA
.(((((((...(((......[....)))...(((.........))).........................(((((..]....))))))))))))....
Publications:
  • Structural basis for tRNA-dependent cysteine biosynthesis.
    Meirong Chen, Koji Kato, Yume Kubo, Yoshikazu Tanaka, Yuchen Liu, Feng Long, William B Whitman, Pascal Lill, Christos Gatsogiannis, Stefan Raunser, Nobutaka Shimizu, Akira Shinoda, Akiyoshi Nakamura, Isao Tanaka, Min Yao
    Nature communications
    volume: 8 issue: 1 date: Nov. 15, 2017 epub: Nov. 15, 2017 PUBMED ID: 29142195 DOI: 1521
  • Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation.
    Sakurako Goto-Ito, Takuhiro Ito, Mitsuo Kuratani, Yoshitaka Bessho, Shigeyuki Yokoyama
    Nature structural & molecular biology
    volume: 16 issue: 10 epub: Sept. 13, 2009 PUBMED ID: 19749755 DOI: 10.1038/nsmb.1653

Secondary structure

Your browser does not support the canvas element.

Tertiary structure

Model based on:
Moderna
We are using technical cookies that are necessary for page to work correctly.