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tdbPDB000034

NameValue
Coding AA: Gln
Anticodon sequence: CUG
Organism: Escherichia coli NCBI:txid562
RNA type: cytoplasmic
Sequence: gGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGAGGUCGAGGUUCGAAUCCUCGUACCCCAGCCA
Unmodified sequence: gGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGAGGUCGAGGUUCGAAUCCUCGUACCCCAGCCA
Secondary structure: ((((((..(((.....[...))).(((((.......)))))....(((((..]....))))))))))).....
PDB ID: 1exd
Homology model or
structure extracted from PDB:		 Model Download (by Moderna) (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: May 30, 2019, modified: June 29, 2026
Folding free energy [kcal/mol]: -27.00
Pre-aligned sequence:
Pre-aligned secondary structure:		 --gGGGUAUCGCCAAGC--GGU--AAGGCACCGGAUUCUGAUUCCGGAG-------------------GU-CGAGGUUCGAAUCCUCGUACCCCAGCCA
..((((((..(((.......[.....))).(((((.......)))))........................(((((..]....))))))))))).....
Publications:
  • Tertiary core rearrangements in a tight binding transfer RNA aptamer.
    T L Bullock, L D Sherlin, J J Perona
    Nature structural biology
    volume: 7 issue: 6 PUBMED ID: 10881199

Aminoacylation

NameValue
Positive identity elements regulating aminoacylation: G73; U1-A72; G2-C71; G3-C70; G10; U34; U35; G36; A37; U38
Negative identity elements antideterminants of aminoacylation: NA
Citation: Rogers,M.J., Adachi,T., Inokuchi,H. and S¨oll,D. (1992) Switching tRNAGln identity from glutamine to tryptophan. Proc. Natl Acad. Sci. USA, 89, 3463–3467.
DOI: 10.1073/pnas.89.8.3463
PMID: 1565639

Secondary structure

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Tertiary structure

Model based on:
Moderna