tdbR00000596

Name	Value
Coding AA:	Sec
Anticodon sequence:	UCA
Organism:	Dictyostelium discoideum NCBI:txid44689
RNA type:	cytoplasmic
Sequence:	GCGUGUUUGAUCGCUAUCUGGGGAUGCGUGUGGACUUCAAAUCCAUAGCUCGAUAACUCGAGAGUUGUUCGAUUCAACCUGACGCGCGCCA
Unmodified sequence:	GCGUGUUUGAUCGCUAUCUGGGGAUGCGUGUGGACUUCAAAUCCAUAGCUCGAUAACUCGAGAGUUGUUCGAUUCAACCUGACGCGCGCCA
Secondary structure:	(((((((....(((...........))).(((((.......)))))................(((((.......)))).))))))))....
Homology model or structure extracted from PDB:	Model (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	unversioned, created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]:	-14.60
Pre-aligned sequence: Pre-aligned secondary structure:	-GCGUGUUU_CGCUAUCU-GGG-GAUGCGUGUGGACUUCAAAUCCAUAGCUCGA--UAAC---UCGAG---AGUUGUUCGAUUCAA_UGACGCGCGCCA .(((((((..(((.............))).(((((.......)))))........................(.(((.......))).))))))))....
Publications:	Selenocysteine tRNA identification in the model organisms Dictyostelium discoideum and Tetrahymena thermophila. Rajeev K Shrimali, Alexey V Lobanov, Xue-Ming Xu, Mahadev Rao, Bradley A Carlson, Dana C Mahadeo, Carole A Parent, Vadim N Gladyshev, Dolph L Hatfield Biochemical and biophysical research communications volume: 329 issue: 1 PUBMED ID: 15721286
Comments:	MODIFIED NUCLEOTIDES WERE NOT DETERMINED;THE LONGEST KNOWN TRNA MOLECULE- 91 NT
Previous entry:	tdbR00000596 (Sept. 22, 2019, 6 p.m.)