tdbR00000597

Name	Value
Coding AA:	Sec
Anticodon sequence:	UCA
Organism:	Tetrahymena thermophila NCBI:txid5911
RNA type:	cytoplasmic
Sequence:	GCUUUGGUGACUUGGACUGGUGUCCAGGACGGGCUUCAAACCCGUGGGUGUCGAAAGGCACAGGAGUUCGAUUCUCCCUCCGGAGCGCCA
Unmodified sequence:	GCUUUGGUGACUUGGACUGGUGUCCAGGACGGGCUUCAAACCCGUGGGUGUCGAAAGGCACAGGAGUUCGAUUCUCCCUCCGGAGCGCCA
Secondary structure:	(((((((....((((........)))).(((((.......)))))................(((((.......)))).))))))))....
Homology model or structure extracted from PDB:	Model Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	unversioned, created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-20.00
Pre-aligned sequence: Pre-aligned secondary structure:	-GCUUUGGU_UUGGACU--GGU-GUCCAGGACGGGCUUCAAACCCGUGGGUGUC--GAAA---GGCAC---AGGAGUUCGAUUCUC_UCCGGAGCGCCA .(((((((..((((...........)))).(((((.......)))))........................(.(((.......))).))))))))....
Publications:	Selenocysteine tRNA identification in the model organisms Dictyostelium discoideum and Tetrahymena thermophila. Rajeev K Shrimali, Alexey V Lobanov, Xue-Ming Xu, Mahadev Rao, Bradley A Carlson, Dana C Mahadeo, Carole A Parent, Vadim N Gladyshev, Dolph L Hatfield Biochemical and biophysical research communications volume: 329 issue: 1 date: April 1, 2005 PUBMED ID: 15721286
Comments:	MODIFIED NUCLEOTIDES WERE NOT DETERMINED
Previous entry:	tdbR00000597 (Sept. 22, 2019, 6:15 p.m.)

Model based on:

RNA Composer