tdbR00000010

Name	Value
Coding AA:	Ala
Anticodon sequence:	VGC
Organism:	Escherichia coli NCBI:txid562
RNA type:	cytoplasmic
Sequence:	GGGGCUA4AGCUCAGCDGGGAGAGCGCCUGCUUVGCACGCAGGAG7UCUGCGGTPCGAUCCCGCAUAGCUCCACCA
Unmodified sequence:	GGGGCUAUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCUGCGGUUCGAUCCCGCAUAGCUCCACCA
Secondary structure:	(((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	unversioned, created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-29.20
Pre-aligned sequence: Pre-aligned secondary structure:	-GGGGCUA4AGCUCAGCD-GGG--AGAGCGCCUGCUUVGCACGCAGGAG-------------------7UCUGCGGTPCGAUCCCGCAUAGCUCCACCA .(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	Spacer transfer RNAs in ribosomal RNA transcripts of E. coli: processing of 30S ribosomal RNA in vitro. E Lund, J E Dahlberg Cell volume: 11 issue: 2 PUBMED ID: 329997
Comments:	At position 32 could be also Um () At position 34 could be also mcmo5U
Previous entry:	tdbR00000010 (March 25, 2020, 1:11 p.m.)

Model based on:

Moderna

RNA Composer