tdbR00000988

NameValue
Coding AA: Ala
Anticodon sequence: 5GC
Organism: Staphylococcus aureus NCBI:txid1280
RNA type: cytoplasmic
Sequence: GGGGGCUUAGCUCAGCUGGGAGAGCGCCUGCUU5GCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGUCUCCACCA
Unmodified sequence: GGGGGCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGUCUCCACCA
Secondary structure: (((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:
Model (last update May 11, 2020)
Prepared by: User
Version: unversioned, created: May 11, 2020, modified: May 11, 2020
Folding free energy [kcal/mol]: -28.40
Pre-aligned sequence:
Pre-aligned secondary structure:
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
-GGGGGCUUAGCUCAGCU-GGG--AGAGCGCC5GCUUUGCACGCAGGAG-------------------GUCAGCGGUUCGAUCCCGCUAGUCUCCACCA
Publications:
  • Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS
    Antoine L, Wolff P, Westhof E, Romby P, Marzi S
    Biochimie
    volume: 164:64-69 date: Sept. 1, 2019 epub: July 8, 2019 PUBMED ID: 31295507 DOI: 10.1016/j.biochi.2019.07.003
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