tdbR00001029

NameValue
Coding AA: Asn
Anticodon sequence: GUU
Organism: Vibrio cholerae C6706 NCBI:txid948564
RNA type: cytoplasmic
Sequence: UCCUCCUUAGUUCAGUCGGUAGAACGGCGGACUGUUAAUCCGUAUGUCGCAGGUUCGAGUCCCGCAGGAGGAGCCA
Unmodified sequence: UCCUCCU4AGUUCAGUCGGUAGAACGGCGGACUGUUAAUCCGUAUGUCGCAGGUUCGAGUCCCGCAGGAGGAGCCA
Secondary structure: (((((((..((((........)))).(((((.......))))).....((.((.......)).)))))))))....
Homology model or
structure extracted from PDB:		 Model (last update Oct. 29, 2020)
Prepared by: User
Version: unversioned, created: Oct. 29, 2020, modified: June 26, 2025
Folding free energy [kcal/mol]: -21.80
Pre-aligned sequence:
Pre-aligned secondary structure:		 -UCCUCCU4AGUUCAGUC-GGU--AGAACGGCGGACUGUUAAUCCGUAUGUC-------------------GCAGGUUCGAGUCCCGCAGGAGGAGCCA
.(((((((..((((...........)))).(((((.......)))))........................((.((.......)).)))))))))....
Publications:
  • MODOMICS: a database of RNA modification pathways. 2017 update.
    Pietro Boccaletto, Magdalena A Machnicka, Elzbieta Purta, Pawel Piatkowski, Blazej Baginski, Tomasz K Wirecki, Valérie de Crécy-Lagard, Robert Ross, Patrick A Limbach, Annika Kotter, Mark Helm, Janusz M Bujnicki
    Nucleic acids research
    volume: 46 issue: D1 date: Jan. 4, 2018 PUBMED ID: 29106616 DOI: 10.1093/nar/gkx1030

Secondary structure

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Tertiary structure

Model based on:
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