tdbR00001060

Name	Value
Coding AA:	Thr
Anticodon sequence:	UGU
Organism:	Vibrio cholerae C6706 NCBI:txid948564
RNA type:	cytoplasmic
Sequence:	GCCGACU4AGCUCAGUAGGUAGAGCAACUGACUUGUAAUCAGUAGGUCACCAGUUCGAUUCCGGUAGUCGGCACCA
Unmodified sequence:	GCCGACUUAGCUCAGUAGGUAGAGCAACUGACUUGUAAUCAGUAGGUCACCAGUUCGAUUCCGGUAGUCGGCACCA
Secondary structure:	(((((((..((((........)))).(((((.......))))).....(((.(.......).))))))))))....
Homology model or structure extracted from PDB:	Model Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	User
Version:	unversioned, created: Oct. 29, 2020, modified: July 2, 2025
Folding free energy [kcal/mol]:	-21.50
Pre-aligned sequence: Pre-aligned secondary structure:	-GCCGACU4AGCUCAGUA-GGU--AGAGCAACUGACUUGUAAUCAGUAG-------------------GUCACCAGUUCGAUUCCGGUAGUCGGCACCA .(((((((..((((...........)))).(((((.......)))))........................(((.(.......).))))))))))....
Publications:	Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications. Satoshi Kimura, Peter C Dedon, Matthew K Waldor Nature chemical biology volume: 16 issue: 9 epub: June 8, 2020 PUBMED ID: 32514182 DOI: 10.1038/s41589-020-0558-1

Model based on:

RNA Composer