tdbR00001062

NameValue
Coding AA: Trp
Anticodon sequence: CCA
Organism: Vibrio cholerae C6706 NCBI:txid948564
RNA type: cytoplasmic
Sequence: AGGGGUG4AGCUCCAAUUGGCAGAGCAGCGGAUUCCA≠AUCCGCGUGUUGGGAGUUCGAAUCUCUCCACCCCUGCCA
Unmodified sequence: AGGGGUGUAGCUCCAAUUGGCAGAGCAGCGGAUUCCAAAUCCGCGUGUUGGGAGUUCGAAUCUCUCCACCCCUGCCA
Secondary structure: (((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:
Model (last update Oct. 29, 2020)
Prepared by: User
Version: unversioned, created: Oct. 29, 2020, modified: Oct. 29, 2020
Folding free energy [kcal/mol]: -27.30
Pre-aligned sequence:
Pre-aligned secondary structure:
-AGGGGUG4AGCUCCAAUUGGC--AGAGCAGCGGAUUCCA≠AUCCGCGU-------------------GUUGGGAGUUCGAAUCUCUCCACCCCUGCCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications
    Satoshi Kimura, Peter C Dedon, Matthew K Waldor
    Nature chemical biology
    volume: 16 issue: (9):964-972 date: Sept. 1, 2020 PUBMED ID: 32514182 DOI: 10.1038/s41589-020-0558-1
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