tdbR00000501

Name	Value
Coding AA:	Ini
Anticodon sequence:	CAU
Organism:	Halococcus morrhuae NCBI:txid2250
RNA type:	cytoplasmic
Sequence:	AGCGGGAUGGGAPAGCCAGGAGAUUCCLGCGGGCUCAUAACCCGCAGAUCAGUAG.]BOAAUCUACUUCCCGCUACCA
Unmodified sequence:	AGCGGGAUGGGAUAGCCAGGAGAUUCCGGCGGGCUCAUAACCCGCAGAUCAGUAGAUCAAAUCUACUUCCCGCUACCA
Secondary structure:	(((((((..(((............))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	2 (Oct. 4, 2024), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-25.70
Pre-aligned sequence: Pre-aligned secondary structure:	-AGCGGGAUGGGAPAGCCAGGAG-AUUCCLGCGGGCUCAUAACCCGCAG-------------------AUCAGUAG.]BOAAUCUACUUCCCGCUACCA .(((((((..(((.............))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	Initiator tRNAs from archaebacteria show common unique sequence characteristics. Y Kuchino, M Ihara, Y Yabusaki, S Nishimura Nature volume: 298 issue: 5875 date: Aug. 12, 1982 PUBMED ID: 6178978 Archaebacterial tRNA contains 1-methylinosine at residue 57 in T psi C-loop. Z Yamaizumi, M Ihara, Y Kuchino, R Gupta, C R Woese, S Nishimura Nucleic acids symposium series issue: 11 PUBMED ID: 7183961
Previous entry:	tdbR00000501 (Oct. 4, 2024, 2:53 p.m.)

Model based on:

RNA Composer