tdbR00000570

Name	Value
Coding AA:	Sec
Anticodon sequence:	NCA
Organism:	Mus musculus NCBI:txid10090
RNA type:	cytoplasmic
Sequence:	GCCCGGAU_CCUCAGUGGUCUGGGGUGCAGGCUNCA+ACCUGUAGCUGUUUAGCGACAGAGUGGUPCA"UUCCA_UUUCGGGCGCCA
Unmodified sequence:	GCCCGGAUUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUUUAGCGACAGAGUGGUUCAAUUCCACUUUCGGGCGCCA
Secondary structure:	(((((((..((((........))))((((((.......))))))...............(((((.......))))))))))))....
PDB ID:	3rg5
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	unversioned, created: Feb. 25, 2019, modified: June 26, 2025
Folding free energy [kcal/mol]:	-27.00
Pre-aligned sequence: Pre-aligned secondary structure:	-GCCCGGAU_CCUCAGU--GGUC-UGGGGUGCAGGCUNCA+ACCUGUAGCUGUU--UAGC---GACAG---AGUGGUPCA"UUCCA_UUUCGGGCGCCA .(((((((..((((...........))))((((((.......)))))).......................(((((.......))))))))))))....
Publications:	Minor serine tRNA containing anticodon NCA (C4 RNA) from human and mouse cells. N Kato, H Hoshino, F Harada Biochemistry international volume: 7 issue: 5 PUBMED ID: 6435631 Crystal structure analysis reveals functional flexibility in the selenocysteine-specific tRNA from mouse. Oleg M Ganichkin, Ekaterina A Anedchenko, Markus C Wahl PloS one volume: 6 issue: 5 epub: May 24, 2011 PUBMED ID: 21629646 DOI: e20032
Comments:	34 N IS PROBABLY A MODIFIED U
Previous entry:	tdbR00000570 (Nov. 7, 2024, 4 p.m.)

Model based on:

Moderna

RNA Composer