tdbR00000580

NameValue
Coding AA: Lys
Anticodon sequence: UUU
Organism: Aeropyrum pernix NCBI:txid56636
RNA type: cytoplasmic
Sequence: GGGCCCGUAGCUCAGCCCGGCAGAGCGGCGGGCUUUUACCCCGCGGAAGGUCCCGGGUUCAAAUCCCGGCGGGCCCGCCA
Unmodified sequence: GGGCCCGUAGCUCAGCCCGGCAGAGCGGCGGGCUUUUACCCCGCGGAAGGUCCCGGGUUCAAAUCCCGGCGGGCCCGCCA
Secondary structure: (((((((..((((.........)))).(((((.......)))))........(((((.......))))))))))))....
Homology model or
structure extracted from PDB:
Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -37.80
Pre-aligned sequence:
Pre-aligned secondary structure:
-GGGCCCGUAGCUCAGCCCGGC--AGAGCGGCGGGCUUUUACCCCGCGG-------AAG---------GUCCCGGGUUCAAAUCCCGGCGGGCCCGCCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Characterization of a whole set of tRNA molecules in an aerobic hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1.
    Syuji Yamazaki, Hisashi Kikuchi, Yutaka Kawarabayasi
    DNA research : an international journal for rapid publication of reports on genes and genomes
    volume: 12 issue: 6 epub: Feb. 23, 2006 PUBMED ID: 16769697
Comments: MODIFIED NUCLEOTIDES WERE NOT DETERMINED
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