tdbR00000356
| Name | Value |
|---|---|
| Coding AA: | Arg |
| Anticodon sequence: | ICG |
| Organism: | Escherichia coli NCBI:txid562 |
| RNA type: | cytoplasmic |
| Sequence: | GCAUCCG4AGCUCAGCDGGADAGAGUACUCGGCUICG/ACCGAGCG7XCGGAGGTPCGAAUCCUCCCGGAUGCACCA |
| Unmodified sequence: | GCAUCCGUAGCUCAGCUGGAUAGAGUACUCGGCUACGAACCGAGCGGUCGGAGGUUCGAAUCCUCCCGGAUGCACCA |
| Secondary structure: | (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))).... |
| Homology model or structure extracted from PDB: |
Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025) |
| Prepared by: | Database creators |
| Version: | 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: June 29, 2026 |
| Folding free energy [kcal/mol]: | -28.50 |
| Pre-aligned sequence: Pre-aligned secondary structure: |
-GCAUCCG4AGCUCAGCD-GGAD-AGAGUACUCGGCUICG/ACCGAGCG-------------------7XCGGAGGTPCGAAUCCUCCCGGAUGCACCA .(((((((..((((...........)))).(((((.......)))))........................(((((.......)))))))))))).... |
| Publications: |
|
| Comments: | 20 PARTIALLY U |
Aminoacylation
| Name | Value |
|---|---|
| Positive identity elements regulating aminoacylation: | A/G73; G2-C71; C3-G70; A20; C35; U/G36 |
| Negative identity elements antideterminants of aminoacylation: | NA |
| Citation: | Stephen,P., Ye,S., Zhou,M., Song,J., Zhang,R., Wang,E.-D., Gieg´e,R. and Lin,S.-X. (2018) Structure of Escherichia coli arginyl-tRNA synthetase in complex with tRNAArg: pivotal role of the D-loop. J. Mol. Biol., 430, 1590–1606. |
| DOI: | 10.1016/j.jmb.2018.04.011 |
| PMID: | 29678554 |
Secondary structure
Tertiary structure
Model based on: