tdbR00000394

NameValue
Coding AA: Ser
Anticodon sequence: VGA
Organism: Escherichia coli NCBI:txid562
RNA type: cytoplasmic
Sequence: GGAAGUG4GGCCGAGC#GDDGAAGGCACCGGUBUVGA*AACCGGCGACCCGAAAGGGUUCCAGAGTPCGAAUCUCUGCGCUUCCGCCA
Unmodified sequence: GGAAGUGUGGCCGAGCGGUUGAAGGCACCGGUCUUGAAAACCGGCGACCCGAAAGGGUUCCAGAGUUCGAAUCUCUGCGCUUCCGCCA
Secondary structure: (((((((..(((...........))).(((((.......)))))................(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -25.00
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GGAAGUG4GGCCGAGC--#GDDGAAGGCACCGGUBUVGA*AACCGGC-GACCC--GAAA---GGGUU--CCAGAGTPCGAAUCUCUGCGCUUCCGCCA
.(((((((..(((.............))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • The nucleotide sequence of a serine tRNA from Escherichia coli.
    H Ishikura, Y Yamada, S Nishimura
    FEBS letters
    volume: 16 issue: 1 date: July 15, 1971 PUBMED ID: 11945903
  • Identification of a modified nucleoside in Escherichia coli tRNA1Ser as 2'-O-methylcytidine.
    Y Yamada, H Ishikura
    Biochimica et biophysica acta
    volume: 402 issue: 3 date: Sept. 1, 1975 PUBMED ID: 1100116
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