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tdbR00000584

NameValue
Coding AA: Pro
Anticodon sequence: GGG
Organism: Aeropyrum pernix NCBI:txid56636
RNA type: cytoplasmic
Sequence: GGGGCCGUCGUCUAGCCUGGCUAGGAUGCCAGCCUGGGGCGCUGGUGGUCCCGGGUUCAAAUCCCGGCGGCCCCACCA
Unmodified sequence: GGGGCCGUCGUCUAGCCUGGCUAGGAUGCCAGCCUGGGGCGCUGGUGGUCCCGGGUUCAAAUCCCGGCGGCCCCACCA
Secondary structure: (((((((..((((..........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: June 29, 2026
Folding free energy [kcal/mol]: -32.00
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GGGGCCGUCGUCUAGCCUGGCU-AGGAUGCCAGCCUGGGGCGCUGGUG-------------------GUCCCGGGUUCAAAUCCCGGCGGCCCCACCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Characterization of a whole set of tRNA molecules in an aerobic hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1.
    Syuji Yamazaki, Hisashi Kikuchi, Yutaka Kawarabayasi
    DNA research : an international journal for rapid publication of reports on genes and genomes
    volume: 12 issue: 6 epub: Feb. 23, 2006 PUBMED ID: 16769697
Comments: MODIFIED NUCLEOTIDES WERE NOT DETERMINED

Aminoacylation

NameValue
Positive identity elements regulating aminoacylation: A73; G1-C72; G2-C71; G3-C70; G35; G36
Negative identity elements antideterminants of aminoacylation: NA
Citation: Yokozawa,J., Okamoto,K., Kawarabayasi,Y., Kuno,A. and Hasegawa,T. (2003) Molecular recognition of proline tRNA by prolyl-tRNA synthetase from hyperthermophilic archaeon, Aeropyrum pernix K1. Nucleic Acids Res. Suppl., 3, 247–248.
DOI: 10.1093/nass/3.1.247
PMID: 14510473

Secondary structure

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Tertiary structure

Model based on:
Moderna
RNA Composer