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tdbR00000438

NameValue
Coding AA: Thr
Anticodon sequence: GGU
Organism: Escherichia coli NCBI:txid562
RNA type: cytoplasmic
Sequence: GCUGAUAUGGCUCAGDDGGDAGAGCGCACCCUUGGUEAGGGUGAG7UCCCAGTPCGACUCUGGGUAUCAGCACCA
Unmodified sequence: GCUGAUAUGGCUCAGUUGGUAGAGCGCACCCUUGGUAAGGGUGAGGUCCCAGUUCGACUCUGGGUAUCAGCACCA
Secondary structure: (((((((..((((........)))).(((((.......)))))....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: June 29, 2026
Folding free energy [kcal/mol]: -28.30
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GCUGAUAUGGCUCAGDD-GGD--AGAGCGCACCCUUGGUEAGGGUGAG-------------------7-UCCCAGTPCGACUCUGGGUAUCAGCACCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Nucleotide sequence of tRNA(Thr1) of Escherichia coli and of the gene (thrV) that encodes it.
    Y Komine, H Inokuchi
    Nucleic acids research
    volume: 20 issue: 15 date: Aug. 11, 1992 PUBMED ID: 1380693

Aminoacylation

NameValue
Positive identity elements regulating aminoacylation: G1-C72; C2-G71; G4-C69; G5-C68; G34; G35; U36
Negative identity elements antideterminants of aminoacylation: NA
Citation: Hasegawa,T., Miyano,M., Himeno,H., Sano,Y., Kimura,K. and Shimizu,M. (1992) Identity determinants of E. coli threonine tRNA. Biochem. Biophys Res. Commun., 184, 478–484.
DOI: 10.1016/0006-291X(92)91219-G
PMID: 1567450

Secondary structure

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Tertiary structure

Model based on:
Moderna
RNA Composer