tdbR00000585
| Name | Value |
|---|---|
| Coding AA: | Thr |
| Anticodon sequence: | CGU |
| Organism: | Aeropyrum pernix NCBI:txid56636 |
| RNA type: | cytoplasmic |
| Sequence: | GCCGCCGUAGCUCAGCGGUAGAGCGCCGGCCUCGUAAGCCGGUGGUCGCGGGUUCGAAUCCCGCCGGCGGCUCCA |
| Unmodified sequence: | GCCGCCGUAGCUCAGCGGUAGAGCGCCGGCCUCGUAAGCCGGUGGUCGCGGGUUCGAAUCCCGCCGGCGGCUCCA |
| Secondary structure: | (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))).... |
| Homology model or structure extracted from PDB: |
Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025) |
| Prepared by: | Database creators |
| Version: | 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: June 29, 2026 |
| Folding free energy [kcal/mol]: | -37.10 |
| Pre-aligned sequence: Pre-aligned secondary structure: |
-GCCGCCGUAGCUCAGC--GGU--AGAGCGCCGGCCUCGUAAGCCGGUG-------------------GUCGCGGGUUCGAAUCCCGCCGGCGGCUCCA .(((((((..((((...........)))).(((((.......)))))........................(((((.......)))))))))))).... |
| Publications: |
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| Comments: | MODIFIED NUCLEOTIDES WERE NOT DETERMINED |
Aminoacylation
| Name | Value |
|---|---|
| Positive identity elements regulating aminoacylation: | G1-C72; C2-G71; C3-G70; G35; U36; position 73 not necessarily involved |
| Negative identity elements antideterminants of aminoacylation: | NA |
| Citation: | Nagaoka,Y., Yokozawa,J., Umehara,T., Iwaki,J., Okamoto,K., Kawarabayasi,Y., Koyama,Y., Sako,Y., Wakagi,T., Kuno,A. et al. (2002) Molecular recognition of threonine tRNA by threonyl-tRNA synthetase from an extreme thermophilic archaeon, Aeropyrum pernix K1. Nucleic Acids Res. Suppl., 2, 81–82. |
| DOI: | 10.1093/nass/2.1.81 |
| PMID: | 12903115 |
Secondary structure
Tertiary structure
Model based on: