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tdbR00000582

NameValue
Coding AA: Tyr
Anticodon sequence: GUA
Organism: Aeropyrum pernix NCBI:txid56636
RNA type: cytoplasmic
Sequence: CCCGCCGUAGCUCAGCGGCAGAGCGCCCGGCUGUACACCGGGUGGUCCGGGGUUCGAAUCCCCGCGGCGGGACCA
Unmodified sequence: CCCGCCGUAGCUCAGCGGCAGAGCGCCCGGCUGUACACCGGGUGGUCCGGGGUUCGAAUCCCCGCGGCGGGACCA
Secondary structure: (((((((..((((.......)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: June 29, 2026
Folding free energy [kcal/mol]: -36.50
Pre-aligned sequence:
Pre-aligned secondary structure:		 -CCCGCCGUAGCUCAGC--GGC--AGAGCGCCCGGCUGUACACCGGGUG-------------------GUCCGGGGUUCGAAUCCCCGCGGCGGGACCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Characterization of a whole set of tRNA molecules in an aerobic hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1.
    Syuji Yamazaki, Hisashi Kikuchi, Yutaka Kawarabayasi
    DNA research : an international journal for rapid publication of reports on genes and genomes
    volume: 12 issue: 6 epub: Feb. 23, 2006 PUBMED ID: 16769697
Comments: MODIFIED NUCLEOTIDES WERE NOT DETERMINED

Aminoacylation

NameValue
Positive identity elements regulating aminoacylation: A73; C1-G72; G34; U35; A36
Negative identity elements antideterminants of aminoacylation: NA
Citation: Kuratani,M., Sakai,H., Takahashi,M., Yanagisawa,T., Kobayashi,T., Murayama,K., Chen,L., Liu,Z.-J., Wang,B.-C., Kuroishi,C. et al. (2006) Crystal structures of tyrosyl-tRNA synthetases from Archaea. J. Mol. Biol., 355, 395–408.
DOI: 10.1016/j.jmb.2005.10.073
PMID: 16325203

Secondary structure

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Tertiary structure

Model based on:
Moderna
RNA Composer