tdbR00000001

NameValue
Coding AA: Ala
Anticodon sequence: CGC
Organism: Halobacterium salinarum NCBI:txid2242
RNA type: cytoplasmic
Sequence: GGGCUCGUAGAUCAGCGGUAGAUCRCUUCCUUCGCAAGGAAGAGGCC?UGGG]PBOAAUCCCAGCGAGUCCACCA
Unmodified sequence: GGGCUCGUAGAUCAGCGGUAGAUCGCUUCCUUCGCAAGGAAGAGGCCCUGGGUUCAAAUCCCAGCGAGUCCACCA
Secondary structure: (((((((..((((.......)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:
Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -26.20
Pre-aligned sequence:
Pre-aligned secondary structure:
-GGGCUCGUAGAUCAGC--GGU--AGAUCRCUUCCUUCGCAAGGAAGAG-------------------GCC?UGGG]PBOAAUCCCAGCGAGUCCACCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Sequences of halobacterial tRNAs and the paucity of U in the first position of their anticodons.
    X R Gu, K Nicoghosian, R J Cedergren, J T Wong
    Nucleic acids research
    volume: 11 issue: 16 date: Aug. 25, 1983 PUBMED ID: 6571697
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