tdbR00000380

NameValue
Coding AA: Ser
Anticodon sequence: MGA
Organism: Halobacterium salinarum NCBI:txid2242
RNA type: cytoplasmic
Sequence: GCCGAGGUAGCAPA(CUUGGCCAAUGCRGUUGCUUMGAKAGCAACGUUCCACACGGACU?AGGAG]PBOAAUCUCCUCCUCGGCGCCA
Unmodified sequence: GCCGAGGUAGCAUAGCUUGGCCAAUGCGGUUGCUUCGAGAGCAACGUUCCACACGGACUCAGGAGUUCAAAUCUCCUCCUCGGCGCCA
Secondary structure: (((((((..((((..........)))).(((((.......)))))...............(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -26.40
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GCCGAGGUAGCAPA(CUUGGCC-AAUGCRGUUGCUUMGAKAGCAACG-UUCC---ACAC----GGACU-?AGGAG]PBOAAUCUCCUCCUCGGCGCCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Structure of the archaeal transfer RNA nucleoside G*-15 (2-amino-4,7-dihydro- 4-oxo-7-beta-D-ribofuranosyl-1H-pyrrolo[2,3-d]pyrimidine-5-carboximi dam ide (archaeosine)).
    J M Gregson, P F Crain, C G Edmonds, R Gupta, T Hashizume, D W Phillipson, J A McCloskey
    The Journal of biological chemistry
    volume: 268 issue: 14 date: May 15, 1993 PUBMED ID: 7683667
  • Halobacterium cutirubrum tRNA sequences
    K.Nicoghosian, Xiang-Rong Gu, Robert Cedergren
    FEBS letters
    volume: 193 issue: 2 date: Jan. 1, 1985 PUBMED ID: - DOI: https://doi.org/10.1016/0014-5793(85)80164-2
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