tdbR00000501

NameValue
Coding AA: Ini
Anticodon sequence: CAU
Organism: Halococcus morrhuae NCBI:txid2250
RNA type: cytoplasmic
Sequence: AGCGGGAUGGGAPAGCCAGGAGAUUCCLGCGGGCUCAUAACCCGCAGAUCAGUAG.]BOAAUCUACUUCCCGCUACCA
Unmodified sequence: AGCGGGAUGGGAUAGCCAGGAGAUUCCGGCGGGCUCAUAACCCGCAGAUCAGUAG_UCAAAUCUACUUCCCGCUACCA
Secondary structure: (((((((..(((............))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:
Model (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -24.70
Pre-aligned sequence:
Pre-aligned secondary structure:
-AGCGGGAUGGGAPAGCCAGGAG-AUUCCLGCGGGCUCAUAACCCGCAG-------------------AUCAGUAG.]BOAAUCUACUUCCCGCUACCA
.(((((((..(((.............))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Initiator tRNAs from archaebacteria show common unique sequence characteristics.
    Y Kuchino, M Ihara, Y Yabusaki, S Nishimura
    Nature
    volume: 298 issue: 5875 date: Aug. 12, 1982 PUBMED ID: 6178978
  • Archaebacterial tRNA contains 1-methylinosine at residue 57 in T psi C-loop.
    Z Yamaizumi, M Ihara, Y Kuchino, R Gupta, C R Woese, S Nishimura
    Nucleic acids symposium series
    issue: 11 PUBMED ID: 7183961
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