tdbR00000018 (deprecated)

Name	Value
Coding AA:	Cys
Anticodon sequence:	GCA
Organism:	Haloferax volcanii NCBI:txid2246
RNA type:	cytoplasmic
Sequence:	GCCAAGGUGGCAGA(UUCGGCCCAACGCAUCCGCCUGCAKAGCGGAACCCC?GCCGG]PBOAAUCCGGCCCUUGGCUCCA
Unmodified sequence:	GCCAAGGUGGCAGAGUUCGGCCCAACGCAUCCGCCUGCAGAGCGGAACCCCCGCCGGUUCAAAUCCGGCCCUUGGCUCCA
Secondary structure:	(((((((..((...............)).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Nov. 6, 2024
Folding free energy [kcal/mol]:	100000.00
Pre-aligned sequence: Pre-aligned secondary structure:	-GCCAAGGUGGCAGA(UUCGGCCCAACGCAUCCGCCUGCAKAGCGGAAC-------------------C_?GCCGG]PBOAAUCCGGCCCUUGGCUCCA .(((((((..((...............)).(((((.......)))))........................(((((.......))))))))))))....
Publications:	*Structure of the archaeal transfer RNA nucleoside G-15 (2-amino-4,7-dihydro- 4-oxo-7-beta-D-ribofuranosyl-1H-pyrrolo[2,3-d]pyrimidine-5-carboximi dam ide (archaeosine)).** J M Gregson, P F Crain, C G Edmonds, R Gupta, T Hashizume, D W Phillipson, J A McCloskey The Journal of biological chemistry volume: 268 issue: 14 date: May 15, 1993 PUBMED ID: 7683667 Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs. R Gupta The Journal of biological chemistry volume: 259 issue: 15 date: Aug. 10, 1984 PUBMED ID: 6746655
Next entry:	tdbR00000018 (July 2, 2025, 2:56 p.m.)

Secondary structure

Tertiary structure

Model based on: