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tdbR00000215

NameValue
Coding AA: Leu
Anticodon sequence: 5AG
Organism: Haloferax volcanii NCBI:txid2246
RNA type: cytoplasmic
Sequence: GCGCGGGUAGCCAA(UGGCCAAAGGCRCAGCGCU5AGKACGCUGUGGUGUAGACCUU?GCAGG]PBGAACCCUGUCCCGCGCACCA
Unmodified sequence: GCGCGGGUAGCCAAGUGGCCAAAGGCGCAGCGCUUAGGACGCUGUGGUGUAGACCUUCGCAGGUUCGAACCCUGUCCCGCGCACCA
Secondary structure: (((((((..(((...........)))((((((.......)))))).............(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: June 29, 2026
Folding free energy [kcal/mol]: -30.90
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GCGCGGGUAGCCAA(U--GGCCAAAGGCRCAGCGCU5AGKACGCUGU-GGU----GUAG-----ACCUU?GCAGG]PBGAACCCUGUCCCGCGCACCA
.(((((((..(((.............)))((((((.......)))))).......................(((((.......))))))))))))....
Publications:
  • Structure of the archaeal transfer RNA nucleoside G*-15 (2-amino-4,7-dihydro- 4-oxo-7-beta-D-ribofuranosyl-1H-pyrrolo[2,3-d]pyrimidine-5-carboximi dam ide (archaeosine)).
    J M Gregson, P F Crain, C G Edmonds, R Gupta, T Hashizume, D W Phillipson, J A McCloskey
    The Journal of biological chemistry
    volume: 268 issue: 14 date: May 15, 1993 PUBMED ID: 7683667
  • Transfer RNAs of Halobacterium volcanii: Sequences of five leucine and three serine tRNAs
    R. Gupta
    FEBS letters
    volume: 7 issue: 1 date: Jan. 1, 1986 DOI: https://doi.org/10.1016/S0723-2020(86)80131-X
Comments: 34 IS PROBABLY 5

Aminoacylation

NameValue
Positive identity elements regulating aminoacylation: A73; long variable arm, especially A47CG47d loop sequence and U47h at base of variable arm
Negative identity elements antideterminants of aminoacylation: NA
Citation: Soma,A., Uchiyama,K., Sakamoto,T., Maeda,M. and Himeno,H. (1999) Unique recognition style of tRNALeu by Haloferax volcanii leucyl-tRNA synthetase. J. Mol. Biol., 293, 1029–1038.
DOI: 10.1006/jmbi.1999.3219
PMID: 10547283

Secondary structure

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Tertiary structure

Model based on:
RNA Composer