tdbR00000176

Name	Value
Coding AA:	Lys
Anticodon sequence:	MUU
Organism:	Haloferax volcanii NCBI:txid2246
RNA type:	cytoplasmic
Sequence:	GGGCCGGUAGCUCA(UUAGGCAGAGCRUCUGABUMUU6APCAGACGGU?GCGPG]PBOAAUCGCGUCCGGCCCACCA
Unmodified sequence:	GGGCCGGUAGCUCAGUUAGGCAGAGCGUCUGACUCUUAAUCAGACGGUCGCGUGUUCAAAUCGCGUCCGGCCCACCA
Secondary structure:	(((((((..((((.........))))((((((.......))))))....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]:	-31.40
Pre-aligned sequence: Pre-aligned secondary structure:	-GGGCCGGUAGCUCA(UUAGGC--AGAGCRUCUGABUMUU6APCAGACG-------------------GU?GCGPG]PBOAAUCGCGUCCGGCCCACCA .(((((((..((((...........))))((((((.......)))))).......................(((((.......))))))))))))....
Publications:	Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs. R Gupta The Journal of biological chemistry volume: 259 issue: 15 date: Aug. 10, 1984 PUBMED ID: 6746655 *Structure of the archaeal transfer RNA nucleoside G-15 (2-amino-4,7-dihydro- 4-oxo-7-beta-D-ribofuranosyl-1H-pyrrolo[2,3-d]pyrimidine-5-carboximi dam ide (archaeosine)).** J M Gregson, P F Crain, C G Edmonds, R Gupta, T Hashizume, D W Phillipson, J A McCloskey The Journal of biological chemistry volume: 268 issue: 14 date: May 15, 1993 PUBMED ID: 7683667
Comments:	34 PARTIALLY C; 39 PARTIALLY U; 52 PARTIALLY U