tdbR00000176

NameValue
Coding AA: Lys
Anticodon sequence: MUU
Organism: Haloferax volcanii NCBI:txid2246
RNA type: cytoplasmic
Sequence: GGGCCGGUAGCUCA(UUAGGCAGAGCRUCUGABUMUU6APCAGACGGU?GCGPG]PBOAAUCGCGUCCGGCCCACCA
Unmodified sequence: GGGCCGGUAGCUCAGUUAGGCAGAGCGUCUGACUCUUAAUCAGACGGUCGCGUGUUCAAAUCGCGUCCGGCCCACCA
Secondary structure: (((((((..((((.........))))((((((.......))))))....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]: -31.40
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GGGCCGGUAGCUCA(UUAGGC--AGAGCRUCUGABUMUU6APCAGACG-------------------GU?GCGPG]PBOAAUCGCGUCCGGCCCACCA
.(((((((..((((...........))))((((((.......)))))).......................(((((.......))))))))))))....
Publications:
  • Structure of the archaeal transfer RNA nucleoside G*-15 (2-amino-4,7-dihydro- 4-oxo-7-beta-D-ribofuranosyl-1H-pyrrolo[2,3-d]pyrimidine-5-carboximi dam ide (archaeosine)).
    J M Gregson, P F Crain, C G Edmonds, R Gupta, T Hashizume, D W Phillipson, J A McCloskey
    The Journal of biological chemistry
    volume: 268 issue: 14 date: May 15, 1993 PUBMED ID: 7683667
  • Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs.
    R Gupta
    The Journal of biological chemistry
    volume: 259 issue: 15 date: Aug. 10, 1984 PUBMED ID: 6746655
Comments: 34 PARTIALLY C; 39 PARTIALLY U; 52 PARTIALLY U

Secondary structure

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Tertiary structure

Model based on:
Moderna
RNA Composer
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