tdbR00000578

Name	Value
Coding AA:	Glu
Anticodon sequence:	3UC
Organism:	Leishmania tarentolae NCBI:txid5689
RNA type:	cytoplasmic
Sequence:	UCCGAUGUAGUAUAACGGUUAGAACACCUGGBU3UCACCCAGGAGAUCCGGGUUCGAUUCCCGGUAUCGGAG
Unmodified sequence:	UCCGAUGUAGUAUAACGGUUAGAACACCUGGCUUUCACCCAGGAGAUCCGGGUUCGAUUCCCGGUAUCGGAG
Secondary structure:	(((((((..((.(........).)).(((((.......)))))....(((((.......)))))))))))).
Homology model or structure extracted from PDB:	Model Download (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]:	-19.30
Pre-aligned sequence: Pre-aligned secondary structure:	-UCCGAUGUAGUAUAAC--GGUU-AGAACACCUGGBU3UCACCCAGGAG-------------------A-UCCGGGUUCGAUUCCCGGUAUCGGAG--- .(((((((..((.(...........).)).(((((.......)))))........................(((((.......))))))))))))....
Publications:	Differential localization of nuclear-encoded tRNAs between the cytosol and mitochondrion in Leishmania tarentolae. Stephen T Kapushoc, Juan D Alfonzo, Larry Simpson RNA (New York, N.Y.) volume: 8 issue: 1 PUBMED ID: 11871660 Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism. Tomonori Kaneko, Takeo Suzuki, Stephen T Kapushoc, Mary Anne Rubio, Jafar Ghazvini, Kimitsuna Watanabe, Larry Simpson, Tsutomu Suzuki The EMBO journal volume: 22 issue: 3 date: Feb. 3, 2003 PUBMED ID: 12554666
Comments:	IN POSITION 34 IN MI TRNA IS MCM5UM;PRESENT IN BOTH- CYTOSOL AND MITOCHONDRIA;IMPORTED FROM CYTO;DNA SEQUENCE WAS DETERMINED BY REVERSE TRANSCRIPTION OF TRNA