tdbR00000572

Name	Value
Coding AA:	Lys
Anticodon sequence:	1UU
Organism:	Leishmania tarentolae NCBI:txid5689
RNA type:	cytoplasmic
Sequence:	GCACUUCUAGCUCAGUUGGUAGAGCGCGTGGCU1UU6ACCUCGUGGUCGUGGGUUCGAGCCCCACGGAGUGCG
Unmodified sequence:	GCACUUCUAGCUCAGUUGGUAGAGCGCGUGGCUUUUAACCUCGUGGUCGUGGGUUCGAGCCCCACGGAGUGCG
Secondary structure:	(((((((..((((........)))).((.((.......)).)).....(((((.......)))))))))))).
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-24.70
Pre-aligned sequence: Pre-aligned secondary structure:	-GCACUUCUAGCUCAGUU-GGU--AGAGCGCGTGGCU1UU6ACCUCGUG-------------------GUCGUGGGUUCGAGCCCCACGGAGUGCG--- .(((((((..((((...........)))).((.((.......)).))........................(((((.......))))))))))))....
Publications:	A nuclear tRNA gene cluster in the protozoan Leishmania tarentolae and differential distribution of nuclear-encoded tRNAs between the cytosol and mitochondria. X Shi, D H Chen, Y Suyama Molecular and biochemical parasitology volume: 65 issue: 1 PUBMED ID: 7935626 Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism. Tomonori Kaneko, Takeo Suzuki, Stephen T Kapushoc, Mary Anne Rubio, Jafar Ghazvini, Kimitsuna Watanabe, Larry Simpson, Tsutomu Suzuki The EMBO journal volume: 22 issue: 3 date: Feb. 3, 2003 PUBMED ID: 12554666
Comments:	IN MI TRNA IN POSITION 32 AND 34 ARE CM AND MCM5UM, RESPECTIVELY ; SEQUNCE WAS DERIVED FROM DNA SEQUENCING ; PRESENT IN BOTH- CYTOSOL AND MITOCHONDRIA ; IMPORTED FROM CYTO

Secondary structure

Tertiary structure

Model based on:

Moderna

RNA Composer

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