tdbR00000574

Name	Value
Coding AA:	Trp
Anticodon sequence:	CCA
Organism:	Leishmania tarentolae NCBI:txid5689
RNA type:	cytoplasmic
Sequence:	GGGGGCUUAGCUCAGUGGUAGAGCAUUGGAPUCCA+AUCCAGGGGUCGUAGGUUCAAUCCCUGCAGCUCUCA
Unmodified sequence:	GGGGGCUUAGCUCAGUGGUAGAGCAUUGGAUUCCAAAUCCAGGGGUCGUAGGUUCAAUCCCUGCAGCUCUCA
Secondary structure:	(((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))).
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-21.70
Pre-aligned sequence: Pre-aligned secondary structure:	-GGGGGCUUAGCUCAGU--GGU--AGAGCAUUGGAPUCCA+AUCCAGGG-------------------GUCGUAGGUUCAAUCCCUGCAGCUCUCA--- .(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	A nuclear tRNA gene cluster in the protozoan Leishmania tarentolae and differential distribution of nuclear-encoded tRNAs between the cytosol and mitochondria. X Shi, D H Chen, Y Suyama Molecular and biochemical parasitology volume: 65 issue: 1 PUBMED ID: 7935626 Modification of the universally unmodified uridine-33 in a mitochondria-imported edited tRNA and the role of the anticodon arm structure on editing efficiency. Pamela F Crain, Juan D Alfonzo, Jef Rozenski, Stephen T Kapushoc, James A McCloskey, Larry Simpson RNA (New York, N.Y.) volume: 8 issue: 6 PUBMED ID: 12088148
Comments:	IN MI TRNA IN POSITION 32, 33 AND 34 ARE PM, S2U AND PARTIALY CM OR UM, RESPECTIVELY;SEQUNCE WAS DERIVED FROM DNA SEQUENCING;PRESENT IN BOTH- CYTOSOL AND MITOCHONDRIA;IMPORTED FROM CYTO

Secondary structure

Tertiary structure

Model based on:

Moderna

RNA Composer

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