tdbR00000593

NameValue
Coding AA: Trp
Anticodon sequence: $CA
Organism: Ascaris suum NCBI:txid6253
RNA type: mitochondrial
Sequence: ACAGAUUU"AGUUAAGUUUAAACUCPPGGPPU$CA*AACCAAAAAUUUUACUCPGUACCA
Unmodified sequence: ACAGAUUUAAGUUAAGUUUAAACUCUUGGUUUUCAAAACCAAAAAUUUUACUCUGUACCA
Secondary structure: (((((.(..((((.......)))).(((((.......))))).......).)))))....
Homology model or
structure extracted from PDB:
Model (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -3.60
Pre-aligned sequence:
Pre-aligned secondary structure:
-ACAGAUUU"AGUUAAGUUU----AAACUCPPGGPPU$CA*AACCAAAA-------------------A-U-----UUU---------ACUCPGUACCA
.(((((.(..((((...........)))).(((((.......))))).........................................).)))))....
Publications:
  • Unusual usage of wobble modifications in mitochondrial tRNAs of the nematode Ascaris suum.
    Masayuki Sakurai, Takashi Ohtsuki, Tsutomu Suzuki, Kimitsuna Watanabe
    FEBS letters
    volume: 579 issue: 13 date: May 23, 2005 epub: April 20, 2005 PUBMED ID: 15907479
Comments: 34- PARTIALLY MODIFIED ; 70- PARTIALLY MODIFIED
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