tdbR00000400

NameValue
Coding AA: Ser
Anticodon sequence: 7CU
Organism: Loligo bleekeri NCBI:txid6617
RNA type: mitochondrial
Sequence: AAAGGUAAUUAGGAAUAAAAPAAAGCU7CU6ACPUUAUUUUGAGCAACUCAAAACUGUUCUACCUUUUCCA
Unmodified sequence: AAAGGUAAUUAGGAAUAAAAUAAAGCUGCUAACUUUAUUUUGAGCAACUCAAAACUGUUCUACCUUUUCCA
Secondary structure: (((((((..(..(..)..).(((((.......)))))......(.(...........).))))))))....
Homology model or
structure extracted from PDB:		 Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: 100003.60
Pre-aligned sequence:
Pre-aligned secondary structure:		 -AAAGGUAAUUAGGAA---------UAAAAPAAAGCU7CU6ACPUUAUU------------------UUGAGCAACUCAAAACUGUUCUACCUUUUCCA
.(((((((..(..(...........)..).(((((.......)))))........................(.(...........).))))))))....
Publications:
  • 7-Methylguanosine at the anticodon wobble position of squid mitochondrial tRNA(Ser)GCU: molecular basis for assignment of AGA/AGG codons as serine in invertebrate mitochondria.
    K Tomita, T Ueda, K Watanabe
    Biochimica et biophysica acta
    volume: 1399 issue: 1 date: July 30, 1998 PUBMED ID: 9714749
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