tdbR00000099

Name	Value
Coding AA:	Phe
Anticodon sequence:	#AA
Organism:	Mus musculus NCBI:txid10090
RNA type:	cytoplasmic
Sequence:	AGCCGAAAUALCUC"GDDGGGAGAGCRPPAGA<U#AAKAPCUAAAG7UC?CUGGTPCG"UCCCGGGUUUCGGCACCA
Unmodified sequence:	AGCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCACCA
Secondary structure:	.(((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]:	-21.70
Pre-aligned sequence: Pre-aligned secondary structure:	AGCCGAAAUALCUC"GDD-GGG--AGAGCRPPAGA<U;AAKAPCUAAAG-------------------7UC?CUGGTPCG"UCCCGGGUUUCGGCACCA .(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	Changes of post-transcriptional modification of wye base in tumor-specific tRNAPhe. Y Kuchino, E Borek, D Grunberger, J F Mushinski, S Nishimura Nucleic acids research volume: 10 issue: 20 date: Oct. 25, 1982 PUBMED ID: 6924749 MODOMICS: a database of RNA modification pathways. 2017 update. Pietro Boccaletto, Magdalena A Machnicka, Elzbieta Purta, Pawel Piatkowski, Blazej Baginski, Tomasz K Wirecki, Valérie de Crécy-Lagard, Robert Ross, Patrick A Limbach, Annika Kotter, Mark Helm, Janusz M Bujnicki Nucleic acids research volume: 46 issue: D1 date: Jan. 4, 2018 PUBMED ID: 29106616 DOI: 10.1093/nar/gkx1030
Comments:	32 PARTIALLY C; 34 PARTIALLY G; 37 IS A UNDERMODIFIED WYBUTOSINE