tdbR00000331

NameValue
Coding AA: Gln
Anticodon sequence: $UG
Organism: Mycoplasma capricolum NCBI:txid2095
RNA type: cytoplasmic
Sequence: UGGGCUA4AGCCAAGCGGDA"GGCAAGGGACU$UG=CUCCCUCAUGCGCCGGUPCGAAUCCUGCUAGCCCAACCA
Unmodified sequence: UGGGCUAUAGCCAAGCGGUAAGGCAAGGGACUUUGACUCCCUCAUGCGCCGGUUCGAAUCCUGCUAGCCCAACCA
Secondary structure: (((((((..(((.........))).(((((.......))))).....((.((.......)).)))))))))....
Homology model or
structure extracted from PDB:		 Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]: -22.40
Pre-aligned sequence:
Pre-aligned secondary structure:		 -UGGGCUANAGCCAAGC--GGD--A"GGCAAGGGACU!UG=CUCCCUCA-------------------UGCGCCGGUPCGAAUCCUGCUAGCCCAACCA
.(((((((..(((.............))).(((((.......)))))........................((.((.......)).)))))))))....
Publications:
  • MODOMICS: a database of RNA modification pathways. 2017 update.
    Pietro Boccaletto, Magdalena A Machnicka, Elzbieta Purta, Pawel Piatkowski, Blazej Baginski, Tomasz K Wirecki, Valérie de Crécy-Lagard, Robert Ross, Patrick A Limbach, Annika Kotter, Mark Helm, Janusz M Bujnicki
    Nucleic acids research
    volume: 46 issue: D1 date: Jan. 4, 2018 PUBMED ID: 29106616 DOI: 10.1093/nar/gkx1030
  • Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. Resemblance to mitochondria.
    Y Andachi, F Yamao, A Muto, S Osawa
    Journal of molecular biology
    volume: 209 issue: 1 date: Sept. 5, 1989 PUBMED ID: 2478713
Comments: 8 PARTIALLY MODIFIED URIDINE

Secondary structure

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Tertiary structure

Model based on:
Moderna
RNA Composer
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