tdbR00000433

NameValue
Coding AA: Thr
Anticodon sequence: AGU
Organism: Mycoplasma capricolum NCBI:txid2095
RNA type: cytoplasmic
Sequence: GCUGACU4AGCUCAGUDGGDAGAGCAAUUGACUAGU6APCAAUAG7UCGAAGGUPCAAAUCCUUUAGUCAGCACCA
Unmodified sequence: GCUGACUUAGCUCAGUUGGUAGAGCAAUUGACUAGUAAUCAAUAGGUCGAAGGUUCAAAUCCUUUAGUCAGCACCA
Secondary structure: (((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:
Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -20.30
Pre-aligned sequence:
Pre-aligned secondary structure:
-GCUGACUNAGCUCAGUD-GGD--AGAGCAAUUGACUAGU6APCAAUAG-------------------7UCGAAGGUPCAAAUCCUUUAGUCAGCACCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Occurrence of unmodified adenine and uracil at the first position of anticodon in threonine tRNAs in Mycoplasma capricolum.
    Y Andachi, F Yamao, M Iwami, A Muto, S Osawa
    Proceedings of the National Academy of Sciences of the United States of America
    volume: 84 issue: 21 PUBMED ID: 3502716
  • MODOMICS: a database of RNA modification pathways. 2017 update.
    Pietro Boccaletto, Magdalena A Machnicka, Elzbieta Purta, Pawel Piatkowski, Blazej Baginski, Tomasz K Wirecki, Valérie de Crécy-Lagard, Robert Ross, Patrick A Limbach, Annika Kotter, Mark Helm, Janusz M Bujnicki
    Nucleic acids research
    volume: 46 issue: D1 date: Jan. 4, 2018 PUBMED ID: 29106616 DOI: 10.1093/nar/gkx1030
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