tdbR00000011

Name	Value
Coding AA:	Ala
Anticodon sequence:	UGC
Organism:	Neurospora crassa NCBI:txid5141
RNA type:	mitochondrial
Sequence:	GGGGGUAUAGUAUAADUGGDAGUACAGCAAUCUUGCUCANUGCUUGU?AAGGTPCAAAUCCUUGUAUCUCCACCA
Unmodified sequence:	GGGGGUAUAGUAUAAUUGGUAGUACAGCAAUCUUGCUCAUUGCUUGUCAAGGUUCAAAUCCUUGUAUCUCCACCA
Secondary structure:	(((((((..((((........))))((((((.......))))))...(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-17.10
Pre-aligned sequence: Pre-aligned secondary structure:	-GGGGGUAUAGUAUAADU-GGD--AGUACAGCAAUCUUGCUCANUGCUU-------------------G-U?AAGGTPCAAAUCCUUGUAUCUCCACCA .(((((((..((((...........))))((((((.......)))))).......................(((((.......))))))))))))....
Publications:	Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs. J E Heckman, J Sarnoff, B Alzner-DeWeerd, S Yin, U L RajBhandary Proceedings of the National Academy of Sciences of the United States of America volume: 77 issue: 6 PUBMED ID: 6447871
Comments:	40 N IS A MODIFIED U; 49 PARTIALLY MODIFIED

Model based on:

Moderna

RNA Composer