tdbR00000552

NameValue
Coding AA: Tyr
Anticodon sequence: .UA
Organism: Phaseolus vulgaris NCBI:txid3885
RNA type: mitochondrial
Sequence: GGGAGAGUGGCCGAGD#GDCAAAAGCLACAGACU.UAHAPCUGUUGAAGUUUUUCUACGUAGGTPCGAAUCCUGCCUCUCCCACCA
Unmodified sequence: GGGAGAGUGGCCGAGUGGUCAAAAGCGACAGACU_UAAAUCUGUUGAAGUUUUUCUACGUAGGUUCGAAUCCUGCCUCUCCCACCA
Secondary structure: (((((((..((.............))((((((.......)))))).............(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -21.90
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GGGAGAGUGGCCGAGD--#GDCAAAAGCLACAGACU.UAHAPCUGUU-GAAG---UU------UUUCUACGUAGGTPCGAAUCCUGCCUCUCCCACCA
.(((((((..((...............))((((((.......)))))).......................(((((.......))))))))))))....
Publications:
  • Sequences of two bean mitochondria tRNAs(Tyr) which differ in the level of post-transcriptional modification and have a prokaryotic-like large extra-loop.
    L Maréchal, P Guillemaut, J H Weil
    Plant molecular biology
    volume: 5 issue: 6 PUBMED ID: 24306988 DOI: 10.1007/BF00037555
Comments: 18 PARTIALLY MODIFIED; 34 . IS A MODIFIED NUCLEOTIDE; 37 + OR *
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