tdbR00000325

Name	Value
Coding AA:	Pro
Anticodon sequence:	&GG
Organism:	Pichia jadinii NCBI:txid4903
RNA type:	cytoplasmic
Sequence:	GGCBGCGUKGUCPAGDGGDAUGAUACUCGCUU&GGKPGPGAGUG7D??AGGGTPCA"UUCCCUGCUCGGCCCCCA
Unmodified sequence:	GGCCGCGUGGUCUAGUGGUAUGAUACUCGCUUUGGGUGUGAGUGGUCCAGGGUUCAAUUCCCUGCUCGGCCCCCA
Secondary structure:	(((((.(..(((.........)))((((((.......))))))....(((((.......)))))).)))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-22.80
Pre-aligned sequence: Pre-aligned secondary structure:	-GGCBGCGUKGUCPAGD--GGD--AUGAUACUCGCUU&GGKPGPGAGUG-------------------7D??AGGGTPCA"UUCCCUGCUCGGCCCCCA .(((((.(..(((.............)))((((((.......)))))).......................(((((.......)))))).)))))....
Publications:	The nucleotide sequence and codon recognition of proline tRNA from Torulopsis utilis. K Ogawa, M Kawakami, Y Shimizu, S Takemura Journal of biochemistry volume: 91 issue: 4 PUBMED ID: 6920386 A modified nucleoside located in the anticodon of proline tRNA from Torulopsis utilis is 5-carbamoylmethyluridine. K Ogawa, T Kondo, M Kawakami, S Takemura Nucleic acids symposium series issue: 12 PUBMED ID: 6686673

Model based on:

Moderna

RNA Composer